Changes
On July 27, 2022 at 2:34:43 PM UTC, 851c91e4-6343-45af-967a-20a33797707e:
-
Added resource PRJNA631345_Oiling_effects_on_ sulfate_reducing_bacterial.txt to Oiling effects on sulfate-reducing bacterial communities in coastal marine sediment microcosms, based on samples collected at Chandeleur Island, Louisiana (2016) and Estero Bay, Florida (2013, 2015)
| f | 1 | { | f | 1 | { |
| 2 | "author": "Hidetoshi Urakawa", | 2 | "author": "Hidetoshi Urakawa", | ||
| 3 | "author_email": "hurakawa@fgcu.edu", | 3 | "author_email": "hurakawa@fgcu.edu", | ||
| 4 | "creator_user_id": "851c91e4-6343-45af-967a-20a33797707e", | 4 | "creator_user_id": "851c91e4-6343-45af-967a-20a33797707e", | ||
| 5 | "extras": [ | 5 | "extras": [ | ||
| 6 | { | 6 | { | ||
| 7 | "key": "DOI", | 7 | "key": "DOI", | ||
| 8 | "value": "doi:10.7266/AD6DKMAF" | 8 | "value": "doi:10.7266/AD6DKMAF" | ||
| 9 | }, | 9 | }, | ||
| 10 | { | 10 | { | ||
| 11 | "key": "ISO.pointOfContact", | 11 | "key": "ISO.pointOfContact", | ||
| 12 | "value": "Hidetoshi Urakawa <hurakawa@fgcu.edu>" | 12 | "value": "Hidetoshi Urakawa <hurakawa@fgcu.edu>" | ||
| 13 | }, | 13 | }, | ||
| 14 | { | 14 | { | ||
| 15 | "key": "Theme Keywords", | 15 | "key": "Theme Keywords", | ||
| 16 | "value": "Deepwater Horizon oil spill, sulfur, sulfate-reducing | 16 | "value": "Deepwater Horizon oil spill, sulfur, sulfate-reducing | ||
| 17 | bacteria, marine sediment, 16S rRNA, dissimilatory (bi)sulfite | 17 | bacteria, marine sediment, 16S rRNA, dissimilatory (bi)sulfite | ||
| 18 | reductase (dsrB) gene, Microcosm, Metagenomic, Sediment metagenome" | 18 | reductase (dsrB) gene, Microcosm, Metagenomic, Sediment metagenome" | ||
| 19 | } | 19 | } | ||
| 20 | ], | 20 | ], | ||
| 21 | "groups": [], | 21 | "groups": [], | ||
| 22 | "id": "90a4dea6-6dc3-4dfd-8520-bfff0d5b2865", | 22 | "id": "90a4dea6-6dc3-4dfd-8520-bfff0d5b2865", | ||
| 23 | "isopen": false, | 23 | "isopen": false, | ||
| 24 | "license_id": null, | 24 | "license_id": null, | ||
| 25 | "license_title": null, | 25 | "license_title": null, | ||
| 26 | "maintainer": "data@disl.org", | 26 | "maintainer": "data@disl.org", | ||
| 27 | "maintainer_email": "data@disl.org", | 27 | "maintainer_email": "data@disl.org", | ||
| 28 | "metadata_created": "2022-07-27T14:34:42.531634", | 28 | "metadata_created": "2022-07-27T14:34:42.531634", | ||
| n | 29 | "metadata_modified": "2022-07-27T14:34:42.964998", | n | 29 | "metadata_modified": "2022-07-27T14:34:43.424468", |
| 30 | "name": | 30 | "name": | ||
| 31 | ng-bacterial-communities-in-coastal-marine-sediment-microcosad6dkmaf", | 31 | ng-bacterial-communities-in-coastal-marine-sediment-microcosad6dkmaf", | ||
| 32 | "notes": "### Abstract\nThis collection of datasets is generated | 32 | "notes": "### Abstract\nThis collection of datasets is generated | ||
| 33 | from high-throughput rRNA gene sequencing of dissimilatory (bi)sulfite | 33 | from high-throughput rRNA gene sequencing of dissimilatory (bi)sulfite | ||
| 34 | reductase (dsrB) gene of sulfate-reducing bacteria (SRB) and 16S rRNA | 34 | reductase (dsrB) gene of sulfate-reducing bacteria (SRB) and 16S rRNA | ||
| 35 | gene of the total microbial community. A sediment microcosm was | 35 | gene of the total microbial community. A sediment microcosm was | ||
| 36 | prepared to study how the addition of water-accommodated fractions | 36 | prepared to study how the addition of water-accommodated fractions | ||
| 37 | (WAF) of crude oil affect the sediment microbial community. We | 37 | (WAF) of crude oil affect the sediment microbial community. We | ||
| 38 | hypothesize that the addition of hydrocarbons will decrease oxygen | 38 | hypothesize that the addition of hydrocarbons will decrease oxygen | ||
| 39 | concentrations in favor of anaerobic degradation, and sulfate-reducing | 39 | concentrations in favor of anaerobic degradation, and sulfate-reducing | ||
| 40 | bacteria (SRB) group may increase its abundance. Research background | 40 | bacteria (SRB) group may increase its abundance. Research background | ||
| 41 | and DNA sequence data can be accessed at the National Center for | 41 | and DNA sequence data can be accessed at the National Center for | ||
| 42 | Biotechnology Information (NCBI) under accession number | 42 | Biotechnology Information (NCBI) under accession number | ||
| 43 | PRJNA631345.\n\n### Purpose\nShared research information and DNA | 43 | PRJNA631345.\n\n### Purpose\nShared research information and DNA | ||
| 44 | sequences can be used as references by other researchers who study | 44 | sequences can be used as references by other researchers who study | ||
| 45 | oiling effects on sulfate-reducing bacterial communities.\n\n**DOI: | 45 | oiling effects on sulfate-reducing bacterial communities.\n\n**DOI: | ||
| 46 | [doi:10.7266/AD6DKMAF](https://www.doi.org/10.7266/AD6DKMAF)**\n\n### | 46 | [doi:10.7266/AD6DKMAF](https://www.doi.org/10.7266/AD6DKMAF)**\n\n### | ||
| 47 | Suggested Citation\nMegan E. Feeney, Hidetoshi Urakawa. 2020. Oiling | 47 | Suggested Citation\nMegan E. Feeney, Hidetoshi Urakawa. 2020. Oiling | ||
| 48 | effects on sulfate-reducing bacterial communities in coastal marine | 48 | effects on sulfate-reducing bacterial communities in coastal marine | ||
| 49 | sediment microcosms, based on samples collected at Chandeleur Island, | 49 | sediment microcosms, based on samples collected at Chandeleur Island, | ||
| 50 | Louisiana (2016) and Estero Bay, Florida (2013, 2015). Distributed by: | 50 | Louisiana (2016) and Estero Bay, Florida (2013, 2015). Distributed by: | ||
| 51 | Gulf of Mexico Research Initiative Information and Data Cooperative | 51 | Gulf of Mexico Research Initiative Information and Data Cooperative | ||
| 52 | (GRIIDC), Harte Research Institute, Texas A&M University\u2013Corpus | 52 | (GRIIDC), Harte Research Institute, Texas A&M University\u2013Corpus | ||
| 53 | Christi. doi:10.7266/AD6DKMAF\n\n**Funded by:** Gulf of Mexico | 53 | Christi. doi:10.7266/AD6DKMAF\n\n**Funded by:** Gulf of Mexico | ||
| 54 | Research Initiative (GoMRI)\n\n**Funding cycle:** RFP-IV\n\n**Research | 54 | Research Initiative (GoMRI)\n\n**Funding cycle:** RFP-IV\n\n**Research | ||
| 55 | group:** Alabama Center for Ecological Resilience (ACER)\n\n", | 55 | group:** Alabama Center for Ecological Resilience (ACER)\n\n", | ||
| n | 56 | "num_resources": 1, | n | 56 | "num_resources": 2, |
| 57 | "num_tags": 9, | 57 | "num_tags": 9, | ||
| 58 | "organization": { | 58 | "organization": { | ||
| 59 | "approval_status": "approved", | 59 | "approval_status": "approved", | ||
| 60 | "created": "2022-07-22T03:25:13.329710", | 60 | "created": "2022-07-22T03:25:13.329710", | ||
| 61 | "description": "The Dauphin Island Sea Lab organization.", | 61 | "description": "The Dauphin Island Sea Lab organization.", | ||
| 62 | "id": "cb136e67-d862-4b9e-af1c-e5c564cee512", | 62 | "id": "cb136e67-d862-4b9e-af1c-e5c564cee512", | ||
| 63 | "image_url": "", | 63 | "image_url": "", | ||
| 64 | "is_organization": true, | 64 | "is_organization": true, | ||
| 65 | "name": "dauphin-island-sea-lab", | 65 | "name": "dauphin-island-sea-lab", | ||
| 66 | "state": "active", | 66 | "state": "active", | ||
| 67 | "title": "Dauphin Island Sea Lab", | 67 | "title": "Dauphin Island Sea Lab", | ||
| 68 | "type": "organization" | 68 | "type": "organization" | ||
| 69 | }, | 69 | }, | ||
| 70 | "owner_org": "cb136e67-d862-4b9e-af1c-e5c564cee512", | 70 | "owner_org": "cb136e67-d862-4b9e-af1c-e5c564cee512", | ||
| 71 | "private": false, | 71 | "private": false, | ||
| 72 | "relationships_as_object": [], | 72 | "relationships_as_object": [], | ||
| 73 | "relationships_as_subject": [], | 73 | "relationships_as_subject": [], | ||
| 74 | "resources": [ | 74 | "resources": [ | ||
| 75 | { | 75 | { | ||
| 76 | "cache_last_updated": null, | 76 | "cache_last_updated": null, | ||
| 77 | "cache_url": null, | 77 | "cache_url": null, | ||
| 78 | "created": "2022-07-27T14:34:43.005206", | 78 | "created": "2022-07-27T14:34:43.005206", | ||
| 79 | "datastore_active": false, | 79 | "datastore_active": false, | ||
| 80 | "datastore_contains_all_records_of_source_file": false, | 80 | "datastore_contains_all_records_of_source_file": false, | ||
| 81 | "description": null, | 81 | "description": null, | ||
| 82 | "format": "XML", | 82 | "format": "XML", | ||
| 83 | "hash": "", | 83 | "hash": "", | ||
| 84 | "id": "016b1008-893f-4033-924e-1bbfca4f71ef", | 84 | "id": "016b1008-893f-4033-924e-1bbfca4f71ef", | ||
| 85 | "last_modified": "2022-07-27T14:34:42.948616", | 85 | "last_modified": "2022-07-27T14:34:42.948616", | ||
| n | 86 | "metadata_modified": "2022-07-27T14:34:42.970800", | n | 86 | "metadata_modified": "2022-07-27T14:34:43.430258", |
| 87 | "mimetype": "application/xml", | 87 | "mimetype": "application/xml", | ||
| 88 | "mimetype_inner": null, | 88 | "mimetype_inner": null, | ||
| 89 | "name": "R4.x262.000-0058-metadata.xml", | 89 | "name": "R4.x262.000-0058-metadata.xml", | ||
| 90 | "package_id": "90a4dea6-6dc3-4dfd-8520-bfff0d5b2865", | 90 | "package_id": "90a4dea6-6dc3-4dfd-8520-bfff0d5b2865", | ||
| 91 | "position": 0, | 91 | "position": 0, | ||
| 92 | "resource_type": null, | 92 | "resource_type": null, | ||
| 93 | "size": 26798, | 93 | "size": 26798, | ||
| 94 | "state": "active", | 94 | "state": "active", | ||
| 95 | "url": | 95 | "url": | ||
| 96 | 8-893f-4033-924e-1bbfca4f71ef/download/r4.x262.000-0058-metadata.xml", | 96 | 8-893f-4033-924e-1bbfca4f71ef/download/r4.x262.000-0058-metadata.xml", | ||
| t | t | 97 | "url_type": "upload" | ||
| 98 | }, | ||||
| 99 | { | ||||
| 100 | "cache_last_updated": null, | ||||
| 101 | "cache_url": null, | ||||
| 102 | "created": "2022-07-27T14:34:43.467002", | ||||
| 103 | "datastore_active": false, | ||||
| 104 | "datastore_contains_all_records_of_source_file": false, | ||||
| 105 | "description": null, | ||||
| 106 | "format": "TXT", | ||||
| 107 | "hash": "", | ||||
| 108 | "id": "dfa44e3e-4d2b-448a-b3d1-d43c7f32d331", | ||||
| 109 | "last_modified": "2022-07-27T14:34:43.411426", | ||||
| 110 | "metadata_modified": "2022-07-27T14:34:43.430701", | ||||
| 111 | "mimetype": "text/plain", | ||||
| 112 | "mimetype_inner": null, | ||||
| 113 | "name": "PRJNA631345_Oiling_effects_on_ | ||||
| 114 | sulfate_reducing_bacterial.txt", | ||||
| 115 | "package_id": "90a4dea6-6dc3-4dfd-8520-bfff0d5b2865", | ||||
| 116 | "position": 1, | ||||
| 117 | "resource_type": null, | ||||
| 118 | "size": 7346, | ||||
| 119 | "state": "active", | ||||
| 120 | "url": | ||||
| 121 | wnload/prjna631345_oiling_effects_on_-sulfate_reducing_bacterial.txt", | ||||
| 97 | "url_type": "upload" | 122 | "url_type": "upload" | ||
| 98 | } | 123 | } | ||
| 99 | ], | 124 | ], | ||
| 100 | "state": "active", | 125 | "state": "active", | ||
| 101 | "tags": [ | 126 | "tags": [ | ||
| 102 | { | 127 | { | ||
| 103 | "display_name": "16S rRNA", | 128 | "display_name": "16S rRNA", | ||
| 104 | "id": "3d181df1-15a0-44d9-ac5a-f3fd1f1a8a01", | 129 | "id": "3d181df1-15a0-44d9-ac5a-f3fd1f1a8a01", | ||
| 105 | "name": "16S rRNA", | 130 | "name": "16S rRNA", | ||
| 106 | "state": "active", | 131 | "state": "active", | ||
| 107 | "vocabulary_id": null | 132 | "vocabulary_id": null | ||
| 108 | }, | 133 | }, | ||
| 109 | { | 134 | { | ||
| 110 | "display_name": "Deepwater Horizon oil spill", | 135 | "display_name": "Deepwater Horizon oil spill", | ||
| 111 | "id": "3dba9434-7ecc-4aa5-a9f4-df31c3311b85", | 136 | "id": "3dba9434-7ecc-4aa5-a9f4-df31c3311b85", | ||
| 112 | "name": "Deepwater Horizon oil spill", | 137 | "name": "Deepwater Horizon oil spill", | ||
| 113 | "state": "active", | 138 | "state": "active", | ||
| 114 | "vocabulary_id": null | 139 | "vocabulary_id": null | ||
| 115 | }, | 140 | }, | ||
| 116 | { | 141 | { | ||
| 117 | "display_name": "Metagenomic", | 142 | "display_name": "Metagenomic", | ||
| 118 | "id": "e78133f0-4cc7-44ef-8f8d-ee6a052a205b", | 143 | "id": "e78133f0-4cc7-44ef-8f8d-ee6a052a205b", | ||
| 119 | "name": "Metagenomic", | 144 | "name": "Metagenomic", | ||
| 120 | "state": "active", | 145 | "state": "active", | ||
| 121 | "vocabulary_id": null | 146 | "vocabulary_id": null | ||
| 122 | }, | 147 | }, | ||
| 123 | { | 148 | { | ||
| 124 | "display_name": "Microcosm", | 149 | "display_name": "Microcosm", | ||
| 125 | "id": "73b0cdbd-f69e-4078-81cd-bf885a7fad0d", | 150 | "id": "73b0cdbd-f69e-4078-81cd-bf885a7fad0d", | ||
| 126 | "name": "Microcosm", | 151 | "name": "Microcosm", | ||
| 127 | "state": "active", | 152 | "state": "active", | ||
| 128 | "vocabulary_id": null | 153 | "vocabulary_id": null | ||
| 129 | }, | 154 | }, | ||
| 130 | { | 155 | { | ||
| 131 | "display_name": "Sediment metagenome", | 156 | "display_name": "Sediment metagenome", | ||
| 132 | "id": "670fad8c-ca04-41cd-8378-55b7c6519b0b", | 157 | "id": "670fad8c-ca04-41cd-8378-55b7c6519b0b", | ||
| 133 | "name": "Sediment metagenome", | 158 | "name": "Sediment metagenome", | ||
| 134 | "state": "active", | 159 | "state": "active", | ||
| 135 | "vocabulary_id": null | 160 | "vocabulary_id": null | ||
| 136 | }, | 161 | }, | ||
| 137 | { | 162 | { | ||
| 138 | "display_name": "dissimilatory bisulfite reductase dsrB gene", | 163 | "display_name": "dissimilatory bisulfite reductase dsrB gene", | ||
| 139 | "id": "f1345aa2-a060-44b2-a292-f60bb4eb4177", | 164 | "id": "f1345aa2-a060-44b2-a292-f60bb4eb4177", | ||
| 140 | "name": "dissimilatory bisulfite reductase dsrB gene", | 165 | "name": "dissimilatory bisulfite reductase dsrB gene", | ||
| 141 | "state": "active", | 166 | "state": "active", | ||
| 142 | "vocabulary_id": null | 167 | "vocabulary_id": null | ||
| 143 | }, | 168 | }, | ||
| 144 | { | 169 | { | ||
| 145 | "display_name": "marine sediment", | 170 | "display_name": "marine sediment", | ||
| 146 | "id": "f2c3a3c9-c474-41d1-830f-de69bd4548ff", | 171 | "id": "f2c3a3c9-c474-41d1-830f-de69bd4548ff", | ||
| 147 | "name": "marine sediment", | 172 | "name": "marine sediment", | ||
| 148 | "state": "active", | 173 | "state": "active", | ||
| 149 | "vocabulary_id": null | 174 | "vocabulary_id": null | ||
| 150 | }, | 175 | }, | ||
| 151 | { | 176 | { | ||
| 152 | "display_name": "sulfate-reducing bacteria", | 177 | "display_name": "sulfate-reducing bacteria", | ||
| 153 | "id": "3542a96a-d54b-4870-a384-b920ac232452", | 178 | "id": "3542a96a-d54b-4870-a384-b920ac232452", | ||
| 154 | "name": "sulfate-reducing bacteria", | 179 | "name": "sulfate-reducing bacteria", | ||
| 155 | "state": "active", | 180 | "state": "active", | ||
| 156 | "vocabulary_id": null | 181 | "vocabulary_id": null | ||
| 157 | }, | 182 | }, | ||
| 158 | { | 183 | { | ||
| 159 | "display_name": "sulfur", | 184 | "display_name": "sulfur", | ||
| 160 | "id": "316a7ea6-0443-4f24-91dd-1f0c5a288b9e", | 185 | "id": "316a7ea6-0443-4f24-91dd-1f0c5a288b9e", | ||
| 161 | "name": "sulfur", | 186 | "name": "sulfur", | ||
| 162 | "state": "active", | 187 | "state": "active", | ||
| 163 | "vocabulary_id": null | 188 | "vocabulary_id": null | ||
| 164 | } | 189 | } | ||
| 165 | ], | 190 | ], | ||
| 166 | "title": "Oiling effects on sulfate-reducing bacterial communities | 191 | "title": "Oiling effects on sulfate-reducing bacterial communities | ||
| 167 | in coastal marine sediment microcosms, based on samples collected at | 192 | in coastal marine sediment microcosms, based on samples collected at | ||
| 168 | Chandeleur Island, Louisiana (2016) and Estero Bay, Florida (2013, | 193 | Chandeleur Island, Louisiana (2016) and Estero Bay, Florida (2013, | ||
| 169 | 2015)", | 194 | 2015)", | ||
| 170 | "type": "dataset", | 195 | "type": "dataset", | ||
| 171 | "url": null, | 196 | "url": null, | ||
| 172 | "version": null | 197 | "version": null | ||
| 173 | } | 198 | } |