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{
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{
            
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  "author": "Hidetoshi Urakawa",
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  "author": "Hidetoshi Urakawa",
            
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  "author_email": "hurakawa@fgcu.edu",
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  "author_email": "hurakawa@fgcu.edu",
            
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  "creator_user_id": "851c91e4-6343-45af-967a-20a33797707e",
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  "creator_user_id": "851c91e4-6343-45af-967a-20a33797707e",
            
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  "extras": [
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  "extras": [
            
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    {
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    {
            
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      "key": "DOI",
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      "key": "DOI",
            
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      "value": "doi:10.7266/AD6DKMAF"
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      "value": "doi:10.7266/AD6DKMAF"
            
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    },
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    },
            
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    {
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    {
            
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      "key": "ISO.pointOfContact",
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      "key": "ISO.pointOfContact",
            
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      "value": "Hidetoshi Urakawa <hurakawa@fgcu.edu>"
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      "value": "Hidetoshi Urakawa <hurakawa@fgcu.edu>"
            
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    },
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    },
            
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    {
14
    {
            
15
      "key": "Theme Keywords",
15
      "key": "Theme Keywords",
            
16
      "value": "Deepwater Horizon oil spill, sulfur, sulfate-reducing 
16
      "value": "Deepwater Horizon oil spill, sulfur, sulfate-reducing 
            
17
bacteria, marine sediment, 16S rRNA, dissimilatory (bi)sulfite 
17
bacteria, marine sediment, 16S rRNA, dissimilatory (bi)sulfite 
            
18
reductase (dsrB) gene, Microcosm, Metagenomic, Sediment metagenome"
18
reductase (dsrB) gene, Microcosm, Metagenomic, Sediment metagenome"
            
19
    }
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    }
            
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  ],
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  ],
            
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  "isopen": false,
            
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  "license_id": null,
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  "license_id": null,
            
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  "license_title": null,
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  "license_title": null,
            
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  "maintainer": "data@disl.org",
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  "maintainer": "data@disl.org",
            
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  "maintainer_email": "data@disl.org",
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  "maintainer_email": "data@disl.org",
            
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  "metadata_created": "2022-07-27T14:34:42.531634",
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  "metadata_created": "2022-07-27T14:34:42.531634",
            
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  "metadata_modified": "2022-07-27T14:34:42.531643",
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  "metadata_modified": "2022-07-27T14:34:42.964998",
            
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  "name": 
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  "name": 
            
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ng-bacterial-communities-in-coastal-marine-sediment-microcosad6dkmaf",
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ng-bacterial-communities-in-coastal-marine-sediment-microcosad6dkmaf",
            
32
  "notes": "### Abstract\nThis collection of datasets is generated 
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  "notes": "### Abstract\nThis collection of datasets is generated 
            
33
from high-throughput rRNA gene sequencing of dissimilatory (bi)sulfite 
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from high-throughput rRNA gene sequencing of dissimilatory (bi)sulfite 
            
34
reductase (dsrB) gene of sulfate-reducing bacteria (SRB) and 16S rRNA 
34
reductase (dsrB) gene of sulfate-reducing bacteria (SRB) and 16S rRNA 
            
35
gene of the total microbial community. A sediment microcosm was 
35
gene of the total microbial community. A sediment microcosm was 
            
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prepared to study how the addition of water-accommodated fractions 
36
prepared to study how the addition of water-accommodated fractions 
            
37
(WAF) of crude oil affect the sediment microbial community. We 
37
(WAF) of crude oil affect the sediment microbial community. We 
            
38
hypothesize that the addition of hydrocarbons will decrease oxygen 
38
hypothesize that the addition of hydrocarbons will decrease oxygen 
            
39
concentrations in favor of anaerobic degradation, and sulfate-reducing 
39
concentrations in favor of anaerobic degradation, and sulfate-reducing 
            
40
bacteria (SRB) group may increase its abundance. Research background 
40
bacteria (SRB) group may increase its abundance. Research background 
            
41
and DNA sequence data can be accessed at the National Center for 
41
and DNA sequence data can be accessed at the National Center for 
            
42
Biotechnology Information (NCBI) under accession number 
42
Biotechnology Information (NCBI) under accession number 
            
43
PRJNA631345.\n\n### Purpose\nShared research information and DNA 
43
PRJNA631345.\n\n### Purpose\nShared research information and DNA 
            
44
sequences can be used as references by other researchers who study 
44
sequences can be used as references by other researchers who study 
            
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oiling effects on sulfate-reducing bacterial communities.\n\n**DOI: 
45
oiling effects on sulfate-reducing bacterial communities.\n\n**DOI: 
            
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[doi:10.7266/AD6DKMAF](https://www.doi.org/10.7266/AD6DKMAF)**\n\n### 
46
[doi:10.7266/AD6DKMAF](https://www.doi.org/10.7266/AD6DKMAF)**\n\n### 
            
47
Suggested Citation\nMegan E. Feeney, Hidetoshi Urakawa. 2020. Oiling 
47
Suggested Citation\nMegan E. Feeney, Hidetoshi Urakawa. 2020. Oiling 
            
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effects on sulfate-reducing bacterial communities in coastal marine 
48
effects on sulfate-reducing bacterial communities in coastal marine 
            
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sediment microcosms, based on samples collected at Chandeleur Island, 
49
sediment microcosms, based on samples collected at Chandeleur Island, 
            
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Louisiana (2016) and Estero Bay, Florida (2013, 2015). Distributed by: 
50
Louisiana (2016) and Estero Bay, Florida (2013, 2015). Distributed by: 
            
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Gulf of Mexico Research Initiative Information and Data Cooperative 
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Gulf of Mexico Research Initiative Information and Data Cooperative 
            
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(GRIIDC), Harte Research Institute, Texas A&M University\u2013Corpus 
52
(GRIIDC), Harte Research Institute, Texas A&M University\u2013Corpus 
            
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Christi. doi:10.7266/AD6DKMAF\n\n**Funded by:** Gulf of Mexico 
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Christi. doi:10.7266/AD6DKMAF\n\n**Funded by:** Gulf of Mexico 
            
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Research Initiative (GoMRI)\n\n**Funding cycle:** RFP-IV\n\n**Research 
54
Research Initiative (GoMRI)\n\n**Funding cycle:** RFP-IV\n\n**Research 
            
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group:** Alabama Center for Ecological Resilience (ACER)\n\n",
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group:** Alabama Center for Ecological Resilience (ACER)\n\n",
            
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  "organization": {
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    "approval_status": "approved",
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    "approval_status": "approved",
            
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    "created": "2022-07-22T03:25:13.329710",
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    "created": "2022-07-22T03:25:13.329710",
            
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    "description": "The Dauphin Island Sea Lab organization.",
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    "description": "The Dauphin Island Sea Lab organization.",
            
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    "state": "active",
            
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    "title": "Dauphin Island Sea Lab",
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    "title": "Dauphin Island Sea Lab",
            
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    "type": "organization"
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      "id": "016b1008-893f-4033-924e-1bbfca4f71ef",
            
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      "last_modified": "2022-07-27T14:34:42.948616",
            
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  "tags": [
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  "tags": [
            
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    {
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    {
            
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      "display_name": "16S rRNA",
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      "display_name": "16S rRNA",
            
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      "id": "3d181df1-15a0-44d9-ac5a-f3fd1f1a8a01",
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      "id": "3d181df1-15a0-44d9-ac5a-f3fd1f1a8a01",
            
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      "name": "16S rRNA",
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    {
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    {
            
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      "display_name": "Deepwater Horizon oil spill",
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      "display_name": "Deepwater Horizon oil spill",
            
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    {
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      "id": "e78133f0-4cc7-44ef-8f8d-ee6a052a205b",
            
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    {
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      "display_name": "Microcosm",
            
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      "id": "73b0cdbd-f69e-4078-81cd-bf885a7fad0d",
            
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      "name": "Microcosm",
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      "name": "Microcosm",
            
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      "state": "active",
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      "state": "active",
            
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      "vocabulary_id": null
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      "vocabulary_id": null
            
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    },
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    },
            
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    {
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    {
            
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      "display_name": "Sediment metagenome",
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      "display_name": "Sediment metagenome",
            
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      "id": "670fad8c-ca04-41cd-8378-55b7c6519b0b",
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      "id": "670fad8c-ca04-41cd-8378-55b7c6519b0b",
            
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      "name": "Sediment metagenome",
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      "name": "Sediment metagenome",
            
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      "state": "active",
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      "state": "active",
            
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      "vocabulary_id": null
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      "vocabulary_id": null
            
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    },
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    },
            
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    {
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    {
            
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      "display_name": "dissimilatory bisulfite reductase dsrB gene",
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      "display_name": "dissimilatory bisulfite reductase dsrB gene",
            
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      "id": "f1345aa2-a060-44b2-a292-f60bb4eb4177",
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      "id": "f1345aa2-a060-44b2-a292-f60bb4eb4177",
            
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      "name": "dissimilatory bisulfite reductase dsrB gene",
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      "name": "dissimilatory bisulfite reductase dsrB gene",
            
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      "state": "active",
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      "state": "active",
            
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      "vocabulary_id": null
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      "vocabulary_id": null
            
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    },
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    },
            
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    {
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    {
            
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      "display_name": "marine sediment",
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      "display_name": "marine sediment",
            
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      "id": "f2c3a3c9-c474-41d1-830f-de69bd4548ff",
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      "id": "f2c3a3c9-c474-41d1-830f-de69bd4548ff",
            
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      "name": "marine sediment",
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      "name": "marine sediment",
            
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      "state": "active",
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      "state": "active",
            
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      "vocabulary_id": null
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      "vocabulary_id": null
            
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    },
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    },
            
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    {
151
    {
            
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      "display_name": "sulfate-reducing bacteria",
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      "display_name": "sulfate-reducing bacteria",
            
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      "id": "3542a96a-d54b-4870-a384-b920ac232452",
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      "id": "3542a96a-d54b-4870-a384-b920ac232452",
            
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      "name": "sulfate-reducing bacteria",
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      "name": "sulfate-reducing bacteria",
            
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      "state": "active",
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      "state": "active",
            
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      "vocabulary_id": null
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      "vocabulary_id": null
            
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    },
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    },
            
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    {
158
    {
            
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      "display_name": "sulfur",
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      "display_name": "sulfur",
            
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      "id": "316a7ea6-0443-4f24-91dd-1f0c5a288b9e",
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      "id": "316a7ea6-0443-4f24-91dd-1f0c5a288b9e",
            
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      "name": "sulfur",
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      "name": "sulfur",
            
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      "state": "active",
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      "state": "active",
            
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      "vocabulary_id": null
163
      "vocabulary_id": null
            
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    }
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    }
            
140
  ],
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  ],
            
141
  "title": "Oiling effects on sulfate-reducing bacterial communities 
166
  "title": "Oiling effects on sulfate-reducing bacterial communities 
            
142
in coastal marine sediment microcosms, based on samples collected at 
167
in coastal marine sediment microcosms, based on samples collected at 
            
143
Chandeleur Island, Louisiana (2016) and Estero Bay, Florida (2013, 
168
Chandeleur Island, Louisiana (2016) and Estero Bay, Florida (2013, 
            
144
2015)",
169
2015)",
            
145
  "type": "dataset",
170
  "type": "dataset",
            
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  "url": null,
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  "url": null,
            
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  "version": null
172
  "version": null
            
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}
173
}